ApoList – June 2013

 

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Bcl-2 family proteins
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Deletion of MCL-1 causes lethal cardiac failure and mitochondrial dysfunction
Xi Wang, Madhavi Bathina, John Lynch, Brian Koss, Christopher Calabrese, Sharon Frase, John D. Schuetz, Jerold E. Rehg, and Joseph T. Opferman
http://genesdev.cshlp.org/content/27/12/1351.abstract.html

Loss of MCL-1 leads to impaired autophagy and rapid development of heart failure
Robert L. Thomas, David J. Roberts, Dieter A. Kubli, Youngil Lee, Melissa N. Quinsay, Jarvis B. Owens, Kimberlee M. Fischer, Mark A. Sussman, Shigeki Miyamoto, and Åsa B. Gustafsson
http://genesdev.cshlp.org/content/27/12/1365.abstract.html

The loss of the BH3-only Bcl-2 family member Bid delays T-cell leukemogenesis in Atm−/− mice
S Biswas, Q Shi, A Wernick, A Aiello and S S Zinkel
http://www.nature.com/cdd/journal/v20/n7/abs/cdd201316a.html

tBid undergoes multiple conformational changes at the membrane required for Bax activation
Aisha Shamas-Din, Scott Bindner, Weijia Zhu, Yehudit Zaltsman, Clinton Campbell, Atan Gross, Brian Leber, David W. Andrews, and Cécile Fradin
http://www.jbc.org/cgi/content/abstract/M113.482109v2

Control of Cellular Bcl-xL Levels by Deamidation-Regulated Degradation
So Hee Dho, Benjamin E. Deverman, Carlo Lapid, Scott R. Manson, Lu Gan, Jacob J. Riehm, Rajeev Aurora, Ki-Sun Kwon, Steven J. Weintraub
http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001588

MicroRNA-125b promotes apoptosis by regulating the expression of Mcl-1, Bcl-w and IL-6R
J Gong, J-P Zhang, B Li, C Zeng, K You, M-X Chen, Y Yuan and S-M Zhuang
http://www.nature.com/onc/journal/v32/n25/abs/onc2012318a.html

BcL-xL Conformational Changes upon Fragment Binding Revealed by NMR
Clémentine Aguirre, Tim ten Brink, Olivier Walker, Florence Guillière, Dany Davesne, Isabelle Krimm
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0064400

AICAR induces Bax/Bak-dependent apoptosis through upregulation of the BH3-only proteins Bim and Noxa in mouse embryonic fibroblasts
Diana M. González-Gironès, Cristina Moncunill-Massaguer, Daniel Iglesias-Serret, Ana M. Cosialls, Alba Pérez-Perarnau, Claudia M. Palmeri, Camila Rubio-Patiño, Andreas Villunger, Gabriel Pons & Joan Gil
http://link.springer.com/article/10.1007/s10495-013-0850-6

Consequences of the combined loss of BOK and BAK or BOK and BAX
F Ke, P Bouillet, T Kaufmann, A Strasser, J Kerr and A K Voss
http://www.nature.com/cddis/journal/v4/n6/abs/cddis2013176a.html

Three-dimensional structure of Bax-mediated pores in membrane bilayers
X-P Xu, D Zhai, E Kim, M Swift, J C Reed, N Volkmann and D Hanein
http://www.nature.com/cddis/journal/v4/n6/abs/cddis2013210a.html

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Death receptors
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Real-time imaging of the dynamics of death receptors and therapeutics that overcome TRAIL resistance in tumors
T Bagci-Onder, A Agarwal, D Flusberg, S Wanningen, P Sorger and K Shah
http://www.nature.com/onc/journal/v32/n23/abs/onc2012304a.html

Structural And Biophysical Characterization Of The Interactions Between The Death Domain Of Fas Receptor And Calmodulin
Timothy F. Fernandez, Alexandra B. Samal, Gregory J. Bedwell, Yabing Chen, and Jamil S. Saad
http://www.jbc.org/cgi/content/abstract/M113.471821v1

Nucleolin inhibits Fas ligand binding and suppresses Fas-mediated apoptosis in vivo via a surface nucleolin-Fas complex
Jillian F. Wise, Zuzana Berkova, Rohit Mathur, Haifeng Zhu, Frank K. Braun, Rong-Hua Tao, Anita L. Sabichi, Xue Ao, Hoyoung Maeng, and Felipe Samaniego
http://bloodjournal.hematologylibrary.org/content/121/23/4729.abstract.html

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Caspases
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Active caspase-3 is removed from cells by release of caspase-3-enriched vesicles
A.N. Böing, J. Stap, C.M. Hau, G.B. Afink, C. Ris-Stalpers, E.A. Reits, A. Sturk, C.J.F. van Noorden, R. Nieuwland
http://www.sciencedirect.com/science/article/pii/S0167488913001146

Inhibition of hepatocyte autophagy increases tumor necrosis factor-dependent liver injury by promoting caspase-8 activation
M Amir, E Zhao, L Fontana, H Rosenberg, K Tanaka, G Gao and M J Czaja
http://www.nature.com/cdd/journal/v20/n7/abs/cdd201321a.html

Bioluminescence imaging of caspase-3 activity in mouse liver
Qiuxia Fu, Xiangguo Duan, Shaoduo Yan, Licui Wang, Yong Zhou, Shuaizheng Jia, Juan Du, Xiaohui Wang, Yuhua Zhang & Linsheng Zhan
http://link.springer.com/article/10.1007/s10495-013-0849-z

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Miscellaneous
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Cell death proteomics database: consolidating proteomics data on cell death.
Arntzen MØ, Bull VH, Thiede B.
http://dx.doi.org/10.1021/pr4000703
http://celldeathproteomics.uio.no

The Indirect Activation Model of Mitochondrial Outer Membrane Permeabilisation (MOMP) Initiation requires a Trade-off between Robustness in Absence, and Sensitivity in Presence of Stress
Andreas U Lindner,   Jochen HM Prehn and   Heinrich J Huber
http://pubs.rsc.org/en/content/articlelanding/2013/mb/c3mb70076c/unauth

Rotenone induces neuronal death by microglial phagocytosis of neurons
Julius V. Emmrich, Tamara C. Hornik, Jonas J. Neher and Guy C. Brown
http://onlinelibrary.wiley.com/doi/10.1111/febs.12401/abstract

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Reviews
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Developmentally Programmed Cell Death in Drosophila
Donna Denton, May T. Aung-Htut, Sharad Kumar
http://www.sciencedirect.com/science/article/pii/S0167488913002371

Decoding and unlocking the BCL-2 dependency of cancer cells
Philippe Juin, Olivier Geneste, Fabien Gautier, Stéphane Depil & Mario Campone
http://www.nature.com/nrc/journal/v13/n7/abs/nrc3538.html

Central roles of apoptotic proteins in mitochondrial function
S M Kilbride and J H M Prehn
http://www.nature.com/onc/journal/v32/n22/abs/onc2012348a.html

Mature neurons: equipped for survival
A J Kole, R P Annis and M Deshmukh
http://www.nature.com/cddis/journal/v4/n6/abs/cddis2013220a.html

Immunogenic tumor cell death induced by chemoradiotherapy: molecular mechanisms and a clinical translation
K Kono, K Mimura and R Kiessling
http://www.nature.com/cddis/journal/v4/n6/abs/cddis2013207a.html

Crosstalk between apoptosis, necrosis and autophagy
Vassiliki Nikoletopoulou, Maria Markaki, Konstantinos Palikaras, Nektarios Tavernarakis
http://www.sciencedirect.com/science/article/pii/S0167488913002243

Cell death by cornification
Leopold Eckhart, Saskia Lippens, Erwin Tschachler, Wim Declercq
http://www.sciencedirect.com/science/article/pii/S0167488913002334

Non-canonical kinase signaling by the death ligand TRAIL in cancer cells: discord in the death receptor family
K Azijli, B Weyhenmeyer, G J Peters, S de Jong and F A E Kruyt
http://www.nature.com/cdd/journal/v20/n7/abs/cdd201328a.html

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Previews / other
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Bid-ding for mercy: twisted killer in action
A Egle, D Asslaber, A Villunger and J Pinon-Hofbauer
http://www.nature.com/cdd/journal/v20/n7/full/cdd201340a.html

The dark side of TRAIL signaling
S Fulda
http://www.nature.com/cdd/journal/v20/n7/full/cdd201336a.html

Adaptation to Starvation: Translating a Matter of Life or Death
Brendan D. Manning
http://www.cell.com/cancer-cell/abstract/S1535-6108(13)00237-7

Extracellular Adenosine Induces p53-Dependent Cell Death
http://cancerdiscovery.aacrjournals.org/content/3/6/OF9.abstrac.html

Cell death: A2B via p53
http://www.nature.com/nrc/journal/v13/n7/full/nrc3548.html

What Makes You Can Also Break You, Part II: Mitochondrial Permeability Transition Pore Formation by Dimers of the F1FO ATP-Synthase?
Gyorgy Szabadkai and Christos Chinopoulos
http://www.frontiersin.org/molecular_and_cellular_oncology/10.3389/fonc.2013.00140/full

Vital dyes and virtual deaths
M Husmann
http://www.nature.com/cdd/journal/v20/n7/full/cdd201327a.html


Apoptosis Methods
Edited by Seamus J. Martin and Conor M. Henry
http://www.sciencedirect.com/science/journal/10462023/61/2
http://www.sciencedirect.com/science/article/pii/S104620231300193X

Including:

– Measuring apoptosis by microscopy and flow cytometry
Conor M. Henry, Emilie Hollville, Seamus J. Martin
– Isolation, characterisation and reconstitution of cell death signalling complexes
Michelle A. Hughes, Claudia Langlais, Kelvin Cain, Marion MacFarlane
– In vivo assessment of specific cytotoxic T lymphocyte killing
T. Clemente, M.R. Dominguez, N.J. Vieira, M.M. Rodrigues, G.P. Amarante-Mendes
– Evaluation of pyroptosis in macrophages using cytosolic delivery of purified flagellin
Silvia L. Lage, Gustavo P. Amarante-Mendes, Karina R. Bortoluci
– Determination of apoptotic and necrotic cell death in vitro and in vivo
Tom Vanden Berghe, Sasker Grootjans, Vera Goossens, Yves Dondelinger, Dmitri V. Krysko, Nozomi Takahashi, Peter Vandenabeele
– Possible pitfalls investigating cell death responses in genetically engineered mouse models and derived cell lines
Claudia Manzl, Florian Baumgartner, Lukas Peintner, Fabian Schuler, Andreas Villunger
– Flow cytometry based assays for the measurement of apoptosis-associated mitochondrial membrane depolarisation and cytochrome c release
Melinda E. Christensen, Elisa S. Jansen, Washington Sanchez, Nigel J. Waterhouse
– BAK/BAX activation and cytochrome c release assays using isolated mitochondria
Thibaud T. Renault, Konstantinos V. Floros, Jerry E. Chipuk
– BH3 profiling in whole cells by fluorimeter or FACS
Jeremy Ryan, Anthony Letai
– Systems modelling methodology for the analysis of apoptosis signal transduction and cell death decisions
Markus Rehm, Jochen H.M. Prehn
– Methods for detection and analysis of apoptosis signaling in the C. elegans germline
Benjamin Lant, W. Brent Derry

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