Apoptosis and cell death

Apolist: monthly literature updates for researchers

Archive for May, 2011

Apolist – may 2011

Posted by cris on May 31, 2011

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Bcl-2 family proteins
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Non-apoptotic role of BID in inflammation and innate immunity
Garabet Yeretssian, Ricardo G. Correa, Karine Doiron, Patrick Fitzgerald, Christopher P. Dillon, Douglas R. Green, John C. Reed & Maya Saleh
http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09982.html

Overexpression of peroxisomal testis-specific 1 protein induces germ cell apoptosis and leads to infertility in male mice
Karina Kaczmarek, Maja Studencka, Andreas Meinhardt, Krzysztof Wieczerzak, Sven Thoms, Wolfgang Engel, and Pawel Grzmil
http://www.molbiolcell.org/cgi/content/abstract/22/10/1766?etoc

Apoptosis induced by overall metabolic stress converges on the Bcl-2 family proteins Noxa and Mcl-1
Felix M. Wensveen, Nuno L. Alves, Ingrid A. M. Derks, Kris A. Reedquist and Eric Eldering
http://www.springerlink.com/content/7hr20718545812v4/fulltext.html

The Apoptotic Regulator Nrz Controls Cytoskeletal Dynamics via the Regulation of Ca2+ Trafficking in the Zebrafish Blastula
N. Popgeorgiev, B. Bonneau, K.F. Ferri, J. Prudent, J. Thibaut, and G. Gillet
http://www.cell.com/developmental-cell/abstract/S1534-5807(11)00122-5
[Nrz is BCL2L10, DIVA, BOO, BCL-B]

Bcl-2 Inhibits Nuclear Homologous Recombination by Localizing BRCA1 to the Endomembranes
Corentin Laulier, Aurélia Barascu, Josée Guirouilh-Barbat, Gaëlle Pennarun, Catherine Le Chalony, François Chevalier, Gaëlle Palierne, Pascale Bertrand, Jean Marc Verbavatz, and Bernard S. Lopez
http://cancerres.aacrjournals.org/cgi/content/abstract/71/10/3590

Deciphering the Molecular Events Necessary for Synergistic Tumor Cell Apoptosis Mediated by the Histone Deacetylase Inhibitor Vorinostat and the BH3 Mimetic ABT-737
Adrian P. Wiegmans, Amber E. Alsop, Michael Bots, Leonie A. Cluse, Steven P. Williams, Kellie-Marie Banks, Rachael Ralli, Clare L. Scott, Anna Frenzel, Andreas Villunger, and Ricky W. Johnstone
http://cancerres.aacrjournals.org/cgi/content/abstract/71/10/3603

Apogossypol derivative BI-97C1 (Sabutoclax) targeting Mcl-1 sensitizes prostate cancer cells to mda-7/IL-24-mediated toxicity
Rupesh Dash, Belal Azab, Bridget A. Quinn, Xuening Shen, Xiang-Yang Wang, Swadesh K. Das, Mohamed Rahmani, Jun Wei, Michael Hedvat, Paul Dent, Igor P. Dmitriev, David T. Curiel, Steven Grant, Bainan Wu, John L. Stebbins, Maurizio Pellecchia, John C. Reed, Devanand Sarkar, and Paul B. Fisher
http://www.pnas.org/content/108/21/8785.abstract?etoc

Mitochondrial-dependent N-terminal processing of outer membrane Mcl-1 removes an essential mule/lasu1 binding site
Matthew R. Warr, John R. Mills, Mai Nguyen, Stephanie Lemaire-Ewing, Jason Baardsnes, Karen L.i W. Sun, Abba Malina, Jason C. Young, Danny V. Jeyaraju, Maureen O’Connor-McCourt, Luca Pellegrini, Jerry Pelletier, and Gordon C. Shore
http://www.jbc.org/cgi/content/abstract/M111.218321v1

Involvement of BH4 domain of bcl-2 in the regulation of HIF-1-mediated VEGF expression in hypoxic tumor cells
D Trisciuoglio, C Gabellini, M Desideri, Y Ragazzoni, T De Luca, E Ziparo and D Del Bufalo
http://www.nature.com/cdd/journal/v18/n6/full/cdd2010175a.html

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Death receptors and IAPs
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CARD-Mediated Autoinhibition of cIAP1’s E3 Ligase Activity Suppresses Cell Proliferation and Migration
Juanita Lopez, Sidonie Wicky John, Tencho Tenev, Gilles J.P. Rautureau, Mark G. Hinds, Floriana Francalanci, Rebecca Wilson, Meike Broemer, Massimo M. Santoro, Catherine L. Day, and Pascal Meier
http://www.cell.com/molecular-cell/abstract/S1097-2765%2811%2900289-9

Modulation of the CD95-Induced Apoptosis: The Role of CD95 N-Glycosylation
Olga M. Shatnyeva, Andriy V. Kubarenko, Claudia E. M. Weber, Alexander Pappa, Reinhard Schwartz-Albiez, Alexander N. R. Weber, Peter H. Krammer, Inna N. Lavrik
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0019927

Sialylation of the Fas death receptor by ST6Gal-I provides protection against Fas-mediated apoptosis in colon carcinoma cells.
Amanda F. Swindall and Susan L. Bellis
http://www.jbc.org/cgi/content/abstract/M110.211375v1

Survivin monomer plays an essential role in apoptosis regulation
Marat S. Pavlyukov, Nadezhda V. Antipova, Maria V. Balashova, Tatjana V. Vinogradova, Evgenij P. Kopantzev, and Mihail I. Shakhparonov
http://www.jbc.org/cgi/content/abstract/M111.237586v1

TRAIL-R4 Promotes Tumor Growth and Resistance to Apoptosis in Cervical Carcinoma HeLa Cells through AKT
Najoua Lalaoui, Aymeric Morlé, Delphine Mérino, Guillaume Jacquemin, Elisabetta Iessi, Alexandre Morizot, Sarah Shirley, Bruno Robert, Eric Solary, Carmen Garrido, Olivier Micheau
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0019679

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Caspases
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A Peptide-Based Target Screen Implicates the Protein Kinase CK2 in the Global Regulation of Caspase Signaling
James S. Duncan, Jacob P. Turowec, Kelly E. Duncan, Greg Vilk, Chenggang Wu, Bernhard Lüscher, Shawn S.-C. Li, Greg B. Gloor, and David W. Litchfield
http://stke.sciencemag.org/cgi/content/abstract/sigtrans;4/172/ra30?etoc

Following Cytochrome c Release, Autophagy Is Inhibited during Chemotherapy-Induced Apoptosis by Caspase 8-Mediated Cleavage of Beclin 1
Hua Li, Peng Wang, Quanhong Sun, Wen-Xing Ding, Xiao-Ming Yin, Robert W. Sobol, Donna B. Stolz, Jian Yu, and Lin Zhang
http://cancerres.aacrjournals.org/cgi/content/abstract/71/10/3625

Mechanism of a genetically-encoded dark-to-bright reporter for caspase activity
Samantha B. Nicholls, Jun Chu, Genevieve Abbruzzese, Kimberly D. Tremblay, and Jeanne Hardy
http://www.jbc.org/cgi/content/abstract/M111.221648v1

Phosphorylation of caspase-7 by P21-activated protein kinase (PAK)2 inhibits chemotherapeutic drugs-induced apoptosis of breast cancer cell lines
Xiang Li, Weihong Wen, Kangdong Liu, Feng Zhu, Margarita Malakhova, Cong Peng, Tingting Li, Hong-Gyum Kim, Weiya Ma, Yong Yeon Cho, Ann M. Bode, Ziming Dong, and Zigang Dong
http://www.jbc.org/cgi/content/abstract/M111.236596v1

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Miscellaneous
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Atg1 allows second-signaled autophagic cell death in Dictyostelium
Marie-Françoise Luciani, Corinne Giusti, Birthe Harms, Yoshiteru Oshima, Haruhisa Kikuchi, Yuzuru Kubohara and Pierre Golstein
http://www.landesbioscience.com/journals/autophagy/article/14957/

The role of oxidized cytochrome c in regulating mitochondrial reactive oxygen species production and its perturbation in ischaemia
Philippe Pasdois, Joanne E. Parker, Elinor J. Griffiths and Andrew P. Halestrap
http://www.biochemj.org/bj/436/bj4360493.htm

Epithelial cell extrusion requires the sphingosine-1-phosphate receptor 2 pathway
Yapeng Gu, Tetyana Forostyan, Roger Sabbadini, and Jody Rosenblatt
http://jcb.rupress.org/cgi/content/abstract/193/4/667?etoc

Defining the Origins of the NOD-Like Receptor System at the Base of Animal Evolution.
Lange C, Hemmrich G, Klostermeier UC, López-Quintero JA, Miller DJ, Rahn T, Weiss Y, Bosch TC, Rosenstiel P.
http://mbe.oxfordjournals.org/content/28/5/1687.abstract

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Reviews
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Mitochondrial involvement in cell death of non-mammalian eukaryotes.
Abdelwahid E, Rolland S, Teng X, Conradt B, Hardwick JM, White K.
http://dx.doi.org/10.1016/j.bbamcr.2010.10.008

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News and views / other
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Autophagic cell death: Loch Ness monster or endangered species?
Han-Ming Shen and Patrice Codogno
http://www.landesbioscience.com/journals/autophagy/ShenAUTO7-5.pdf

I think autophagy controls the death of my cells: What do I do to get my paper published?
Andrew Thorburn
http://www.landesbioscience.com/journals/autophagy/article/14797/

Cell death: A killer puts a stop on necroptosis
FADD-caspase 8-mediated apoptosis inhibits necroptosis during development.
http://www.nature.com/nrm/journal/v12/n5/full/nrm3101.html?WT.ec_id=NRM-201105

Autophagy and apoptosis are redundantly required for C. elegans embryogenesis
Éva Borsos, Péter Erdélyi and Tibor Vellai
http://www.landesbioscience.com/journals/autophagy/article/14685/

MCL-1 regulates the balance between autophagy and apoptosis
Marc Germain and Ruth S. Slack
http://www.landesbioscience.com/journals/autophagy/article/15098/

There Is More to Life than Death: A Moonlighting Function of a Bcl-2 Member
L. Ravid and E. Arama
http://www.cell.com/developmental-cell/abstract/S1534-5807%2811%2900167-5

Protein Kinases Curb Cell Death
Odile Filhol and Claude Cochet
Phosphorylation of procaspases and their substrates by protein kinase CK2 puts the brakes on cell death.
http://stke.sciencemag.org/cgi/content/abstract/sigtrans;4/172/pe26?etoc

Sphingolipid puts the squeeze on apoptotic cells
Ben Short
http://jcb.rupress.org/cgi/content/full/193/4/596-a?etoc


Aha! … apoptosis: means to an end
R A Knight and G Melino
http://www.nature.com/cdd/journal/v18/n6/full/cdd201125a.html

Jürg Tschopp (1951-2011)
Luke A. O’Neill
A scientist’s basic research into cell death and inflammation will continue to have a clinical impact.
http://www.sciencemag.org/cgi/content/summary/332/6030/679

Jürg Tschopp 1951-2011
R.A. Flavell
http://www.sciencedirect.com/science/article/pii/S0092867411004855

Jürg Tschopp-1951-2011-an immortal contribution.
Kroemer G, Martinon F, Lippens S, Green DR, Knight R, Vandenabeele P, Piacentini M, Nagata S, Borner C, Simon HU, Krammer P, Melino G.
http://www.nature.com/cdd/journal/vaop/ncurrent/full/cdd201146a.html

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Apolist – April 2011

Posted by cris on May 2, 2011

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Bcl-2 family members
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Discovery and molecular characterization of a Bcl-2–regulated cell death pathway in schistosomes
Erinna F. Lee, Oliver B. Clarke, Marco Evangelista, Zhiping Feng, Terence P. Speed, Elissaveta B. Tchoubrieva, Andreas Strasser, Bernd H. Kalinna, Peter M. Colman, and W. Douglas Fairlie
http://www.pnas.org/content/108/17/6999.abstract?etoc

Selective involvement of BH3-only proteins and differential targets of Noxa in diverse apoptotic pathways
L Zhang, H Lopez, N M George, X Liu, X Pang and X Luo
http://www.nature.com/cdd/journal/v18/n5/full/cdd2010152a.html

Investigation of the Bcl-2 multimerisation process: Structural and functional implications
Alessia, Camperchioli | Marisa, Mariani | Silvia, Bartollino | Lella, Petrella | Marco, Persico | Nausicaa, Orteca | Giovanni, Scambia | Shohreh, Shahabi | Cristiano, Ferlini | Caterina, Fattorusso
http://dx.doi.org/10.1016/j.bbamcr.2011.02.006

Bcl-xL Retrotranslocates Bax from the Mitochondria into the Cytosol
F. Edlich, S. Banerjee, M. Suzuki, M.M. Cleland, D. Arnoult, C. Wang, A. Neutzner, N. Tjandra, and R.J. Youle
http://www.cell.com/abstract/S0092-8674%2811%2900186-3

Mitochondrial BCL-2 inhibits AMBRA1-induced autophagy
FlavieStrappazzon, Matteo Vietri-Rudan, Silvia Campello, Francesca Nazio, Fulvio Florenzano, Gian Maria Fimia, Mauro Piacentini, Beth Levine and Francesco Cecconi
http://www.nature.com/emboj/journal/v30/n7/abs/emboj201149a.html

Arginine methylation of BCL-2 antagonist of cell death (BAD) counteracts its phosphorylation and inactivation by Akt
Jun-ichi Sakamaki, Hiroaki Daitoku, Katsuya Ueno, Ayano Hagiwara, Kazuyuki Yamagata, and Akiyoshi Fukamizu
http://www.pnas.org/content/108/15/6085.abstract?etoc

Mcl-1 is critical for survival in a subgroup of non-small-cell lung cancer cell lines
H Zhang, S Guttikonda, L Roberts, T Uziel, D Semizarov, S W Elmore, J D Leverson and L T Lam
http://www.nature.com/onc/journal/v30/n16/full/onc2010559a.html

The Anti-Apoptotic Bcl-xL Protein, a New Piece in the Puzzle of Cytochrome C Interactome
Ivano Bertini, Soizic Chevance, Rebecca Del Conte, Daniela Lalli, Paola Turano
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0018329

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Death receptors and IAPs
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NEMO and RIP1 Control Cell Fate in Response to Extensive DNA Damage via TNF-α Feedforward Signaling
S. Biton and A. Ashkenazi
http://www.cell.com/abstract/S0092-8674%2811%2900175-9

UXT-V1 protects cells against TNF-induced apoptosis through modulating complex II formation
Yuefeng Huang, Liang Chen, Yi Zhou, Heng Liu, Jueqing Yang, Zhenggang Liu, and Chen Wang
http://www.molbiolcell.org/cgi/content/abstract/22/8/1389?etoc

Deletion of cIAP1 and cIAP2 in murine B lymphocytes constitutively activates cell survival pathways and inactivates the germinal center response
Sandra Gardam, Vivian M. Turner, Holly Anderton, Sandhya Limaye, Antony Basten, Frank Koentgen, David L. Vaux, John Silke, and Robert Brink
http://bloodjournal.hematologylibrary.org/cgi/content/abstract/117/15/4041

TWEAK induces apoptosis through a death-signaling complex comprising receptor-interacting protein 1 (RIP1), Fas-associated death domain (FADD) and caspase-8
Aminah Ikner and Avi Ashkenazi
http://www.jbc.org/cgi/content/abstract/M110.203745v1

Characterization of dequalinium as a XIAP antagonist that targets the BIR2 domain
Mar Orzáez, Anna Gortat, Mónica Sancho, Rodrigo J. Carbajo, Antonio Pineda-Lucena, Yadira Palacios-Rodríguez & Enrique Pérez-Payá
http://www.springerlink.com/content/xm45135052573643/

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Caspases and execution phase
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Concerted antigen processing of a short viral antigen by human caspases 5 and 10
Daniel López, Mercedes Jiménez, Margarita Garcia-Calvo, and Margarita Del Val
J. Biol. Chem. published 28 March 2011, 10.1074/jbc.M111.234658
http://www.jbc.org/cgi/content/abstract/M111.234658v1

Apoptotic microtubule network organization and maintenance depend on high cellular ATP levels and energized mitochondria
Manuel Oropesa, Mario de la Mata, Juan Garrido Maraver, Mario D. Cordero, David Cotán, Ángeles Rodríguez-Hernández, Irene Domínguez-Moñino, Manuel de Miguel, Plácido Navas & José A. Sánchez-Alcázar
http://www.springerlink.com/content/47h1021vl35l1h77/

Receptor for advanced glycation end products binds to phosphatidylserine and assists in the clearance of apoptotic cells
Mei He, Hiroshi Kubo, Konosuke Morimoto, Naoya Fujino, Takaya Suzuki, Toru Takahasi, Mitsuhiro Yamada, Mutsuo Yamaya, Tomoyuki Maekawa, Yasuhiko Yamamoto and Hiroshi Yamamoto
http://www.nature.com/embor/journal/v12/n4/full/embor201128a.html

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MISCELLANEOUS
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Mechanisms of necroptosis in T cells
Irene L. Ch’en, Jennifer S. Tsau, Jeffery D. Molkentin, Masaaki Komatsu, and Stephen M. Hedrick
In caspase 8-deficient mouse T cells, necroptosis occurs via a Ripk3- and Ripk1-dependent pathway independent of autophagy and programmed necrosis.
http://jem.rupress.org/cgi/content/abstract/208/4/633?etoc

Poly(ADP-Ribose) (PAR) Binding to Apoptosis-Inducing Factor Is Critical for PAR Polymerase-1-Dependent Cell Death (Parthanatos)
Yingfei Wang, No Soo Kim, Jean-Francois Haince, Ho Chul Kang, Karen K. David, Shaida A. Andrabi, Guy G. Poirier, Valina L. Dawson, and Ted M. Dawson
http://stke.sciencemag.org/cgi/content/abstract/sigtrans;4/167/ra20?etoc

Activation of p53 by Nutlin-3a Induces Apoptosis and Cellular Senescence in Human Glioblastoma Multiforme
Ruth Villalonga-Planells, Llorenç Coll-Mulet, Fina Martínez-Soler, Esther Castaño, Juan-Jose Acebes, Pepita Giménez-Bonafé, Joan Gil, Avelina Tortosa
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0018588

Dimerization of Smac is crucial for its mitochondrial retention by XIAP subsequent to mitochondrial outer membrane permeabilization
Lorna Flanagan, Jordi Sebastia, Maria Eugenia Delgado, Jennifer C. Lennon, Markus Rehm
http://dx.doi.org/10.1016/j.bbamcr.2011.02.011

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Reviews
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The Open Cell Signaling Journal special issue:
“Life and death: A cell signaling prospective”

– Editorial
John Silke
http://www.benthamscience.com/open/tocellsj/articles/V003/SI0001TOCELLSJ/1TOCELLSJ.pdf

– Interplay of Bcl-2 Proteins Decides the Life or Death Fate
Grant Dewson
http://www.benthamscience.com/open/tocellsj/articles/V003/SI0001TOCELLSJ/3TOCELLSJ.htm

– A Prickly Subject: Apoptotic Regulation by Hedgehog Morphogens
Mark Ditzel
http://www.benthamscience.com/open/tocellsj/articles/V003/SI0001TOCELLSJ/9TOCELLSJ.htm

– Cytokine Deprivation and Cell Death
Paul G. Ekert and Anissa M. Jabbour
http://www.benthamscience.com/open/tocellsj/articles/V003/SI0001TOCELLSJ/20TOCELLSJ.htm

– Dual Philosophy in Death Receptor Signalling
Chahrazade Kantari and Henning Walczak
http://www.benthamscience.com/open/tocellsj/articles/V003/SI0001TOCELLSJ/27TOCELLSJ.htm

– Scorched Earth or Viral Birth?
Ian Gentle and Ueli Nachbur
http://www.benthamscience.com/open/tocellsj/articles/V003/SI0001TOCELLSJ/35TOCELLSJ.htm

– Dying for Something to Eat: How Cells Respond to Starvation
Alfredo Caro-Maldonado and Cristina Muñoz-Pinedo
http://www.benthamscience.com/open/tocellsj/articles/V003/SI0001TOCELLSJ/42TOCELLSJ.htm

Armed response: how dying cells influence T-cell functions
Ferguson, Thomas A.; Choi, Jayoung; Green, Douglas R.
http://onlinelibrary.wiley.com/doi/10.1111/j.1600-065X.2011.01006.x/abstract

Signaling cell death from the endoplasmic reticulum stress response
Gordon C Shore, Feroz R Papa, Scott A Oakes
http://dx.doi.org/10.1016/j.ceb.2010.11.003

Regulation of mitochondrial metabolism: yet another facet in the biology of the oncoprotein Bcl 2
Shefali Krishna, Ivan Cherh Chiet Low and Shazib Pervaiz
http://www.biochemj.org/bj/435/bj4350545.htm

Apoptosis promotes early tumorigenesis
D Tang, M T Lotze, R Kang and H J Zeh
http://www.nature.com/onc/journal/v30/n16/full/onc2010573a.html

Programmed Necrosis, Not Apoptosis, in the Heart
Kung, Gloria; Konstantinidis, Klitos; Kitsis, Richard N.
http://circres.ahajournals.org/cgi/pmidlookup?view=long&pmid=21493924

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News and views / other
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Retraction
Retraction Notice to: DNA-PKcs-PIDDosome: A Nuclear Caspase-2-Activating Complex with Role in G2/M Checkpoint Maintenance
M. Shi, C.J. Vivian, K.-J. Lee, C. Ge, K. Morotomi-Yano, C. Manzl, F. Bock, S. Sato, C. Tomomori-Sato, R. Zhu, J.S. Haug, S.K. Swanson, M.P. Washburn, D.J. Chen, B.P.C. Chen, A. Villunger, L. Florens, and C. Du
http://www.cell.com/fulltext/S0092-8674%2811%2900292-3

Autophagy in Ras-Induced Malignant Transformation: Fatal or Vital?
G. Mariño, I. Martins, and G. Kroemer
http://dx.doi.org/10.1016/j.molcel.2011.03.003

Traveling Bax and Forth from Mitochondria to Control Apoptosis
M.E. Soriano and L. Scorrano
http://www.cell.com/abstract/S0092-8674%2811%2900302-3

MCL1 meets its end during mitotic arrest
Scott E Millman and Michele Pagano
http://www.nature.com/embor/journal/v12/n5/full/embor201162a.html

Compartmentalized regulation of autophagy regulators: fine-tuning AMBRA1 by Bcl-2
Sharon ATooze and Patrice Codogno
http://www.nature.com/emboj/journal/v30/n7/abs/emboj201175a.html

Activated by Caspases
Wei Wong
Caspase activity in microglia does not trigger cell death, but rather induces proinflammatory responses.
http://stke.sciencemag.org/cgi/content/abstract/sigtrans;4/170/ec115?etoc

Jurg Tschopp 1951-2011
Ralph C Budd, Pascal Schneider, Fabienne Mackay and Andreas Strasser
http://www.nature.com/ni/journal/v12/n5/full/ni0511-367.html?WT.ec_id=NI-201105

Jürg Tschopp (1951–2011) ▶
Immunologist whose discoveries transformed patients’ lives.
http://www.nature.com/nature/journal/v472/n7343/full/472296a.html

Jürg Tschopp (1951-2011)
J. Browning and C. Ware
http://www.cell.com/immunity/fulltext/S1074-7613%2811%2900135-X

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